Package: dr4pl 2.0.0
dr4pl: Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model
Models the relationship between dose levels and responses in a pharmacological experiment using the 4 Parameter Logistic model. Traditional packages on dose-response modelling such as 'drc' and 'nplr' often draw errors due to convergence failure especially when data have outliers or non-logistic shapes. This package provides robust estimation methods that are less affected by outliers and other initialization methods that work well for data lacking logistic shapes. We provide the bounds on the parameters of the 4PL model that prevent parameter estimates from diverging or converging to zero and base their justification in a statistical principle. These methods are used as remedies to convergence failure problems. Gadagkar, S. R. and Call, G. B. (2015) <doi:10.1016/j.vascn.2014.08.006> Ritz, C. and Baty, F. and Streibig, J. C. and Gerhard, D. (2015) <doi:10.1371/journal.pone.0146021>.
Authors:
dr4pl_2.0.0.tar.gz
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dr4pl.pdf |dr4pl.html✨
dr4pl/json (API)
NEWS
# Install 'dr4pl' in R: |
install.packages('dr4pl', repos = c('https://jtlandis.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://bitbucket.org/dittmerlab/dr4pl
- drc_error_1 - Single High Outlier
- drc_error_2 - Multiple High Outliers at Different measurements
- drc_error_3 - Support Problem and Outliers at a Single Dose Level
- drc_error_4 - Support Problem
- sample_data_1 - Sample_data_1
- sample_data_10 - Sample_data_10
- sample_data_11 - Sample_data_11
- sample_data_12 - Sample_data_12
- sample_data_13 - Sample_data_13
- sample_data_2 - Sample_data_2
- sample_data_3 - Sample_data_3
- sample_data_4 - Sample_data_4
- sample_data_5 - Sample_data_5
- sample_data_6 - Sample_data_6
- sample_data_7 - Sample_data_7
- sample_data_8 - Sample_data_8
- sample_data_9 - Sample_data_9
Last updated 2 years agofrom:61ee4c6740. Checks:ERROR: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Nov 11 2024 |
R-4.5-win | ERROR | Nov 11 2024 |
R-4.5-linux | ERROR | Nov 11 2024 |
R-4.4-win | ERROR | Nov 11 2024 |
R-4.4-mac | ERROR | Nov 11 2024 |
R-4.3-win | ERROR | Nov 11 2024 |
R-4.3-mac | ERROR | Nov 11 2024 |
Exports:augmentcalculatedr4pldr4pl_thetaFindHillBoundsFindInitialParmsFindLogisticGridsgofICLogToParmMeanResponseOutlierDetectionParmToLog
Dependencies:clicolorspacefansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6rbibutilsRColorBrewerRdpackrlangscalestensortibbleutf8vctrsviridisLitewithr